Hikmet Budak | Faculty of Engineering and Natural Sciences | SABANCI UNIVERSITY

Education

Experience

Publications

Projects

People

Awards

Courses

PUBLICATIONS
Selected Publications | Book Chapters | Book

Refereed Publications

Budak H., P.S. Baenziger, R.A. Graybosch, B.S. Beecher, K.M. Eskridge, and M.J. Shipman. (2003). Genetic and environmental effects on agronomic and dough mixing characteristics of diverse hard red winter wheat genotypes. Cereal Chemistry: 80:518-523.

Campbell B.T., P.S. Baenziger, K.S. Gill, K.M. Eskridge, H. Budak, M. Erayman, I. Dweikat, and Y. Yen. (2003). Identification of QTLs and environmental interactions associated with agronomic traits on chromosome 3A of wheat. Crop Science: 43:1493-1505.

Budak H., F. Pedraza, P.B. Cregan, P.S. Baenziger, and I. Dweikat. (2003). Development and utilization of SSRs to evaluate the degree of genetic relationships in a collection of pearl millet germplasm. Crop Science: 43:2284-2290.

Budak H., P.S. Baenziger, B.S. Beecher, R.A. Graybosch, B.T. Campbell, M.J. Shipman, M. Erayman, and K.M. Eskridge. (2004). The effect of introgressions of wheat D-genome chromosomes into `Presto' triticale. Euphytica: 137:261-270.

Campbell B.T., P.S. Baenziger, K.M. Eskridge, H. Budak, A. Weiss, K.S. Gill, and M. Erayman. (2004). Using environmental covariates to explain genotype x environment and QTL x environment interactions for agronomic traits on chromosome 3A of wheat. Crop Science: 46:620 627.

Mahmood A., P.S. Baenziger, H. Budak, K.S. Gill, and I. Dweikat. (2004). The use of microsatellite markers for detection of genetic similarity among winter bread wheat lines for chromosome 3A. Theoretical and Applied Genetics: 109:1494-1503.

Budak H., R.C. Shearman, I. Parmaksiz, R.E. Gaussoin, T.P. Riordan, and I. Dweikat. (2004). Molecular characterization of buffalograss germplasm using sequence-related amplified polymorphism markers. Theoretical and Applied Genetics: 108:328-334.

Budak H., R.C. Shearman, I. Parmaksiz, and I. Dweikat. (2004). Comparative analysis of seeded and vegetative biotype buffalograss based on phylogenetic relationship using ISSRs, SSRs, RAPDs, SRAPs. Theoretical and Applied Genetics: 109: 280-288.

Budak H., R.C. Shearman, and I. Dweikat. (2005). Evolution of Buchloë dactyloides based on cloning and sequencing of matK, rbcL, and cob genes from plastid and mitochondrial genomes. Genome: 48:411-416.

Budak H., R.C. Shearman, O. Gulsen and I. Dweikat. (2005). Understanding ploidy complex and geographic origin of Buchloe dactyloides genome using cytoplasmic and nuclear marker systems. Theoretical and Applied Genetics: 111:1545-1552.

Budak H., Z. Kasap, R.C. Shearman, I. Dweikat, U. Sezerman, and A. Mahmood (2006). Molecular characterization of cDNA encoding resistance gene like sequences in Buchloe dactyloides. Molecular Biotechnology: 34:293-301.

Budak H., S. Su, and N. Ergen (2006). Revealing constitutively-expressed resistance genes in Agrostis species using PCR-based motif directed RNA fingerprinting. Genetical Research: 88:165-175.

Distelfeld A., I. Cakmak, Peleg Z, Ozturk,  L., Yazici MA., Budak H., Saranga, Y., and  Fahima  T (2007). Multiple QTL effects of wheat Gpc-B1 locus on grain protein content and micronutrient concentrations. Physiol. Plantarum: 129:635-643.

Ergen, N., Dinler G., Shearman RC, and Budak H. (2007). Identifying, cloning and structural analysis of differentially expressed genes upon Puccinia infection of Festuca rubra var. rubra. Gene: 393:145-152.

Isik Z, Parmaksiz I, Coruh C, Su S., Cebeci O, Beecher B., and Budak H. (2007). Organellar genome analysis of rye (Secela cereale) representing a diverse geographic region. Genome: 50:724-734.

Ilbagi, H. and Rabenstein, F. and Habekuss, A. and Ordon, F. and Citir, A. and Cebeci, O. and Budak H. (2008). "Molecular, serological and transmission electron microscopic analysis of the barley yellow dwarf virus- PAV and the cereal yellow dwarf virus-RPV in canary seed (Phalaris canariensis L.)". Cereal Research Comm.: 36:225-234.

Dinler G and Budak H. (2008). Analysis of expressed sequence tags (ESTs) from Agrostis species obtained using sequence related amplified polymorphism. Biochemical Genetics: 46:663-676.

Cebeci O, Kokturk B, Ergen N, Ozturk L, Cakmak I, and Budak H (2008). Differential expression of wheat transcriptomes in response to varying cadmium concentrations. Biologia Plantarum: 52:703-708.

Castillo A, Budak H, Varshney RK, Dorado G, Graner A, Hernandez P (2008). Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense. BMC Plant Biology: 28, 8, 97.

Ergen NZ and Budak H (2009). Sequencing over 13 000 expressed sequence tags from six subtractive cDNA libraries of wild and modern wheats following slow drought stress. Plant Cell Environ: 32:220-236.

Unver T and Budak H (2009). Conserved microRNAs and their targets in model grass species Brachypodium distachyon. Planta: 230:659-69.

Ergen NZ, Thimmapuram J, Bohnert HJ, Budak H. (2009). Transcriptome pathways unique to dehydration tolerant relatives of modern wheat. Functional Integrative Genomics: 9:377-396.

Book Chapters

Baenziger, P.S., M. Erayman, H. Budak , and B.T. Campbell. (2004). Breeding pure line cultivars. In Encyclopedia of Plant and Crop Science, 1st Ed.; Goodman, R.M., Ed.; Marcel Dekker, Inc.: New York, USA , 196-201.

E Filiz, Ozdemir BS, Tuna M, Budak H (2009). Diploid Brachypodium distachyon of Turkey: Molecular and Morphological analysis. (Ed. T Yamada and G Spangenberg) Molecular Breeding of Forage and Turf, Springer Science. doi: 10.1007/978-0-387-79144-9_7, page 83-89.

Books

Associate Editor of the Proceedings of The 2006 International Conference on Bioinformatics & Computational Biology (BIOCOMP`06). ISBN numbers: 1-60132-002-7 (441 pages). CSREA press, USA, 2006.

Homepage

Education • Experience • Publications • Projects • People • Awards • Courses